gset_genome: Set misha root based on genome name

In tanaylab/misha.ext: A home to functions that extend the misha package

Set misha root based on genome name

Description

Set misha root based on genome name

Usage

find_params_yaml()

gset_genome(genome, params_yaml = find_params_yaml(), force = TRUE)

Arguments

genome	name of the genome (e.g. hg19)
params_yaml	path to .misha.yaml parameters file. By default, misha.ext would look for such file
force	force gsetroot call, overwriting exsiting memoized genome first at the current directory, then at the user's home directory, then at an environment variable called "MISHA_GENOMES" and if none of the above exist - a new file would be created at the user's home directory. You can run find_params_yaml to see the current location of your configuration file.

Examples

## Not run: 
gset_genome("hg19")

## End(Not run)

tanaylab/misha.ext documentation built on Sept. 18, 2024, 2:53 a.m.