| ArtifCluster | Manually specify coordinates to display the network |
| cor_Big_micro | Correlation network calculation of big microbial community... |
| cor_Big_micro2 | Correlation network calculation of big microbial community... |
| corBionetwork | Microbial related bipartite network analysis |
| corBiostripe | Inter-Domain Ecological Network, we call this biostripe... |
| corBiostripeBig | Inter-Domain Ecological Network, we call this biostripe... |
| corMicro | Correlation network calculation of microbial community data |
| culculate_node_axis | use layout calculated the axis a and y |
| div_culculate | Calculate a bipartite network for microbiome data |
| div_network | Calculate a bipartite network for microbiome data |
| edgeBuild | Construct edge files, add weights, positive and negative... |
| filter_OTU_ps | filter microbiome data |
| filter_OTU_ps2 | filter microbiome data |
| ggflower | Use microbiome data to map petals |
| inputMicro | Quickly import microbiome data and bulding phyloseq object |
| MatCorPlot | Microbial matel text and env correcton with the plot to... |
| MatCorPlot2 | Microbial matel text and env correcton with the plot to... |
| model_Gephi.2 | This is the upgraded version.model_Gephi.2:The algorithm... |
| model_igraph | This is the upgraded version.model_Gephi.2:The algorithm... |
| model_igraph2 | This is the upgraded version.model_Gephi.2:The algorithm... |
| model_maptree | This is the upgraded version.model_Gephi.2:The algorithm... |
| model_maptree2 | This is the upgraded version.model_Gephi.2:The algorithm... |
| module.roles | Module roles |
| modulGroup | Correlation matrix calculates groups according to the degree... |
| net_properties | Use the layout in the sne package to calculate the visual... |
| network | Microbial related network |
| network.2 | Microbial related network |
| network.2.g | Microbial related network |
| network.i | Microbial network only with igraph2 layout |
| network.pip | Microbial related network |
| nodeadd | Add annotation information to network nodes |
| nodeEdge | Construct igraph and tidygraph object |
| node_properties | Compute network node attributes |
| outputgephi | use the phylsoeq object and cor matrix building Gephi input... |
| PolygonClusterG | Construct a network layout. Arrange network nodes to... |
| PolygonMaptreeG | Correlation matrix calculates groups according to the degree... |
| PolygonModsquareG | Construct a network layout. Arrange network nodes to... |
| PolygonRrClusterG | Construct a network layout. Calculate the layout according to... |
| PolyRdmNotdCirG | Construct a network layout. Arrange network nodes to... |
| ps_merge_Tax | Stacked histograms add error bars, marked by significance |
| randomClusterG | Construct a network layout. Randomly distributed module... |
| rand.remov.once | id.rm' species; not consider the sequential effects of... |
| ranSNEClusterG | Use the layout in the sne package to calculate the visual... |
| scale_micro | scaling microbiome data |
| tax_glom_wt | Combine microbiome data by classification level |
| tax_glom_wtTop | Combine microbiome data by classification level |
| vegan_otu | transform a otu table object from phyloseq object to matrix |
| vegan_tax | transform a tax object from phyloseq object to matrix |
| ZiPiPlot | Use the layout in the sne package to calculate the visual... |
