tax_glom_wt | R Documentation |
Combine microbiome data by classification level
tax_glom_wt(ps = ps, ranks = "Phylum")
ps |
phyloseq object |
ranks |
tax of microbiome data,could be one of Phylum, Order, Class, Genus ta al. |
S4 phyloseq abject
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q Root exudates drive the soil-borne legacy of aboveground pathogen infection Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
tax_glom_wt(ps = ps,ranks = "Genus")
tax_glom_wt(ps = ps,ranks = "Class")
tax_glom_wt(ps = ps,ranks = "Order")
tax_glom_wt(ps = ps,ranks = "Phylum")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.