View source: R/PolygonModsquareG.R
PolygonModsquareG | R Documentation |
Construct a network layout. Arrange network nodes to different locations according to grouping
PolygonModsquareG(cor = cor, nodeGroup = netClu, r1 = 1, N = 1.1, cut = 3)
cor |
Correlation matrix |
nodeGroup |
Classification information of network nodes.Group according to actual requirements, see example |
r1 |
big cluster r |
N |
break of each cluster |
cut |
line need to cut off |
result2 Which contains 2 lists.Result2[[1]], consists of OTU and its corresponding coordinates. Result2[[2]], consists of the network center coordinates of each group
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn Penghao Xie 2019103106@njau.edu.cn
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q Root exudates drive the soil-borne legacy of aboveground pathogen infection Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
data
data(ps)
result = corMicro (ps = ps,N = 100,r.threshold=0.8,p.threshold=0.05,method = "pearson")
#Extract correlation matrix
cor = result[[1]]
# building the node group
netClu = data.frame(ID = row.names(cor),group =rep(1:3,length(row.names(cor)))[1:length(row.names(cor))] )
netClu$group = as.factor(netClu$group)
result2 = PolygonModsquareG(cor = cor,nodeGroup =netClu,r1 = 1,N = 1.1,cut = 3,line = FALSE)
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