vegan_otu: transform a otu table object from phyloseq object to matrix
In taowenmicro/ggClusterNet:
vegan_otu R Documentation
transform a otu table object from phyloseq object to matrix
Description
transform a otu table object from phyloseq object to matrix
Usage
vegan_otu(physeq)
Arguments
physeq
a phyloseq object from R package phyloseq
Value
matrix
Author(s)
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn
References
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q
Root exudates drive the soil-borne legacy of aboveground pathogen infection
Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
Examples
otu = otu_table(ps)
taowenmicro/ggClusterNet documentation built on March 29, 2025, 1:04 p.m.
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| vegan_otu | R Documentation |
transform a otu table object from phyloseq object to matrix
Description
transform a otu table object from phyloseq object to matrix
Usage
vegan_otu(physeq)
Arguments
physeq |
a phyloseq object from R package phyloseq |
Value
matrix
Author(s)
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn
References
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q Root exudates drive the soil-borne legacy of aboveground pathogen infection Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
Examples
otu = otu_table(ps)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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