predictionLayer: This creates a special type of ggplot2 Layer object. The...

Description Usage Arguments Examples

View source: R/ggplot.R

Description

You can use this just like a regular 'layer' call. Beware that this function does not warn you about spurious or misspelled arguments, as these will be passed along to 'predict()' instead.

Usage

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predictionLayer(
  mapping = NULL,
  data = NULL,
  geom = "line",
  stat = "identity",
  position = "identity",
  ...,
  n = 101,
  show.legend = NA,
  inherit.aes = TRUE
)

Arguments

mapping

Set of aesthetic mappings created by aes() or aes_(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot().

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify() for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame, and will be used as the layer data. A function can be created from a formula (e.g. ~ head(.x, 10)).

geom

The geometric object to use display the data

stat

The statistical transformation to use on the data for this layer, as a string.

position

Position adjustment, either as a string, or the result of a call to a position adjustment function.

...

extra arguments, which go partly into the geom/stat parameters, and partly into extra_params (which go into the 'predict' call)

n

Specifies whether the prediction must be performed on interpolated points along the x-axis.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. It can also be a named logical vector to finely select the aesthetics to display.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders().

Examples

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m1 <- tdmore(theopp_nlmixr)
db <- dataTibble(
     observed=data.frame(ID=c(1,2), TIME=5, CONC=c(10,15)),
     regimen=data.frame(TIME=0, AMT=5)
)
pred <- posthoc(object=m1, db)
ggplot2::ggplot(pred$fit[[1]], ggplot2::aes(x=TIME, y=CONC)) +
    ggplot2::geom_point() + predictionLayer(newdata=seq(0, 10, 0.1)) +
    predictionLayer(data=pred$fit[[2]], newdata=seq(0, 10, 0.1), color=2)

tdmore-dev/tdmore documentation built on Jan. 1, 2022, 3:21 a.m.