API for tgrimes/SeqNet
Generate RNA-Seq Data from Gene-Gene Association Networks
| Global functions | |
|---|---|
| add_modules_to_network | Man page Source code |
| add_random_module_to_network | Man page Source code |
| all_networks_contain_same_modules | Man page Source code |
| all_networks_contain_same_nodes | Man page Source code |
| as_single_module | Man page Source code |
| components_in_adjacency | Man page Source code |
| connect_module_structure | Man page Source code |
| create_cytoscape_file | Man page Source code |
| create_empty_module | Man page Source code |
| create_empty_network | Man page Source code |
| create_module_from_adjacency_matrix | Man page Source code |
| create_module_from_association_matrix | Man page Source code |
| create_modules_for_network | Man page Source code |
| create_network_from_adjacency_matrix | Man page Source code |
| create_network_from_association_matrix | Man page Source code |
| create_network_from_modules | Man page Source code |
| dzinb | Man page Source code |
| ecdf_cpp | Man page Source code |
| edges_from_adjacency_cpp | Man page Source code |
| est_params_from_reference | Man page Source code |
| gen_gaussian | Man page Source code |
| gen_partial_correlations | Man page Source code |
| gen_rnaseq | Man page Source code |
| gen_zinb | Man page Source code |
| get_adjacency_matrix | Man page Source code |
| get_adjacency_matrix.default | Man page Source code |
| get_adjacency_matrix.matrix | Man page Source code |
| get_adjacency_matrix.network | Man page Source code |
| get_adjacency_matrix.network_module | Man page Source code |
| get_association_matrix | Man page Source code |
| get_association_matrix.default | Man page Source code |
| get_association_matrix.matrix | Man page Source code |
| get_association_matrix.network | Man page Source code |
| get_association_matrix.network_module | Man page Source code |
| get_degree_distribution | Man page Source code |
| get_edge_weights_from_module | Man page Source code |
| get_layout_for_modules | Man page Source code |
| get_network_arguments | Man page Source code |
| get_network_characteristics | Man page Source code |
| get_network_modules | Man page Source code |
| get_node_names | Man page Source code |
| get_node_names.default | Man page Source code |
| get_node_names.matrix | Man page Source code |
| get_node_names.network | Man page Source code |
| get_node_names.network_module | Man page Source code |
| get_sigma | Man page Source code |
| get_sigma.default | Man page Source code |
| get_sigma.matrix | Man page Source code |
| get_sigma.network | Man page Source code |
| get_sigma.network_module | Man page Source code |
| get_summary_for_node | Man page Source code |
| heatmap_network | Man page Source code |
| is_PD | Man page Source code |
| is_adjacency_cpp | Man page Source code |
| is_symmetric_cpp | Man page Source code |
| is_weighted | Man page Source code |
| is_weighted.default | Man page Source code |
| is_weighted.matrix | Man page Source code |
| is_weighted.network | Man page Source code |
| is_weighted.network_module | Man page Source code |
| perturb_network | Man page Source code |
| plot.network | Man page Source code |
| plot.network_module | Man page Source code |
| plot.network_plot | Man page Source code |
| plot_gene_pair | Man page Source code |
| plot_modules | Man page Source code |
| plot_network | Man page Source code |
| plot_network_diff | Man page |
| plot_network_sim | Man page |
| print.network | Man page Source code |
| print.network_module | Man page Source code |
| print.network_plot | Man page Source code |
| pzinb | Man page |
| qzinb | Man page |
| random_module | Man page Source code |
| random_module_structure | Man page Source code |
| random_network | Man page Source code |
| reference | Man page |
| remove_connections | Man page Source code |
| remove_connections.default | Man page Source code |
| remove_connections.matrix | Man page Source code |
| remove_connections.network | Man page Source code |
| remove_connections.network_module | Man page Source code |
| remove_connections_to_node | Man page Source code |
| remove_connections_to_node.default | Man page Source code |
| remove_connections_to_node.matrix | Man page Source code |
| remove_connections_to_node.network | Man page Source code |
| remove_connections_to_node.network_module | Man page Source code |
| remove_weights | Man page Source code |
| remove_weights.default | Man page Source code |
| remove_weights.matrix | Man page Source code |
| remove_weights.network | Man page Source code |
| remove_weights.network_module | Man page Source code |
| replace_module_in_network | Man page Source code |
| rewire_connections | Man page Source code |
| rewire_connections.default | Man page Source code |
| rewire_connections.matrix | Man page Source code |
| rewire_connections.network | Man page Source code |
| rewire_connections.network_module | Man page Source code |
| rewire_connections_to_node | Man page Source code |
| rewire_connections_to_node.default | Man page Source code |
| rewire_connections_to_node.matrix | Man page Source code |
| rewire_connections_to_node.network | Man page Source code |
| rewire_connections_to_node.network_module | Man page Source code |
| ring_lattice_cpp | Man page Source code |
| rzinb | Man page |
| sample_link_nodes | Man page Source code |
| sample_module_nodes | Man page Source code |
| sample_reference_data | Man page Source code |
| set_module_edges | Man page Source code |
| set_module_name | Man page Source code |
| set_module_weights | Man page Source code |
| set_node_names | Man page Source code |
| update_module_with_random_weights | Man page Source code |
