R/data.R

In tgrimes/SeqNet: Generate RNA-Seq Data from Gene-Gene Association Networks

#' RNA-seq reference dataset
#' 
#' The reference is a breast invasive carcinoma dataset containing gene 
#' expression profiles generated by The Cancer Genome Atlas (TCGA) and 
#' downloaded using the LinkedOmics portal. The dataset contains 1093 samples 
#' and 15944 genes. The reference is a list containing a data frame of the 
#' expression data and a data frame of estimated ZINB parameters for each 
#' expression profile.
#' 
#' @format A list containing two data frames:
#' \describe{
#'   \item{$rnaseq}{A 1093 by 15944 data frame containing the raw RNA-seq 
#'   expression counts}
#'   \item{$params}{A 3 by 15944 data frame containing the estimated 
#'   ZINB parameters for each expression profile}
#' }
#' @source \url{http://www.linkedomics.org/data_download/TCGA-BRCA/}
"reference"