assigner_dots: assigner_dots

In thierrygosselin/assigner: Assignment Analysis with RADseq Data

Description

Extract and assign the dots-dots-dots

Usage

assigner_dots(
  func.name = as.list(sys.call())[[1]],
  fd = NULL,
  args.list = NULL,
  dotslist = NULL,
  keepers = c("subsample.markers.stats", "force.stats", "id.stats", "subsample",
    "filter.reproducibility", "filter.individuals.missing",
    "filter.individuals.heterozygosity", "filter.individuals.coverage.total",
    "filter.individuals.coverage.median", "filter.individuals.coverage.iqr",
    "filter.common.markers", "filter.monomorphic", "filter.mac", "filter.coverage", "dp",
    "filter.genotyping", "filter.snp.position.read", "filter.snp.number",
    "filter.short.ld", "filter.long.ld", "long.ld.missing", "ld.method", "ld.figures",   
      "detect.mixed.genomes", "ind.heterozygosity.threshold", "detect.duplicate.genomes",
    "filter.hwe", "filter.strands", "random.seed", "path.folder", "filename",
    "parameters", "blacklist.genotypes", "erase.genotypes", "pop.levels", "pop.labels",
    "pop.select", "blacklist.id", "markers.info", "keep.allele.names", "keep.gds",
    "vcf.metadata", "vcf.stats", "wide", "whitelist.markers", "write.tidy",
    "missing.memory", "dart.sequence", "internal", "tidy.check", "tidy.vcf", "tidy.dart",
    "gt", "gt.bin", "gt.vcf",      "gt.vcf.nuc", "calibrate.alleles"),
  deprecated = NULL,
  verbose = TRUE
)

Arguments

func.name	Default: as.list(sys.call())[[1]].
fd	(optional) Default: rlang::fn_fmls_names().
args.list	(optional) Default:args.list = as.list(environment()).
dotslist	The dots dots dots arguments captured. Default: dotslist = rlang::dots_list(..., .homonyms = "error", .check_assign = TRUE).
keepers	(optional) The arguments that are used inside the function. Default: keepers = c( "subsample.markers.stats", "subsample", "filter.reproducibility", "filter.individuals.missing", "filter.individuals.heterozygosity", "filter.individuals.coverage.total", "filter.individuals.coverage.median", "filter.individuals.coverage.iqr", "filter.common.markers", "filter.monomorphic", "filter.mac", "filter.coverage", "filter.genotyping", "filter.snp.position.read", "filter.snp.number", "filter.short.ld", "filter.long.ld", "long.ld.missing", "ld.method", "detect.mixed.genomes", "ind.heterozygosity.threshold", "detect.duplicate.genomes", "filter.hwe", "filter.strands", "random.seed", "path.folder", "filename", "blacklist.genotypes", "erase.genotypes", "gt", "gt.bin", "gt.vcf", "gt.vcf.nuc", "pop.levels", "pop.labels", "pop.select", "blacklist.id", "markers.info", "keep.allele.names", "keep.gds", "vcf.metadata", "vcf.stats", "id.stats", "dp", "whitelist.markers", "write.tidy", "dart.sequence", "missing.memory", "internal", "tidy.check", "tidy.vcf", "tidy.dart", "calibrate.alleles").
deprecated	(optional) assigner's deprecated arguments. Default: deprecated = NULL.
verbose	(logical) Function will output more details.

thierrygosselin/assigner documentation built on Oct. 28, 2020, 5:47 p.m.