Description Usage Arguments Value Author(s) References Examples
The function computes Paetkau's et al. (1997) genotype likelihood ratio distance (Dlr).
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data |
The output assignment file (home likelihood or likelihood ratio statistics) from GENODIVE. |
strata |
A tab delimited file with 2 columns with header:
|
plots |
(optional) Generate Dlr plots for all the pairwise populations
in the dataset. The plots are |
filename |
(optional) Name of the file prefix for the matrix and the table written in the working directory. |
parallel.core |
(optional) The number of core for parallel computation.
Default: |
A list with 5 objects:
the assignment results ($assignment),
the dlr pairwise table ($dlr.table),
the lower diagonal dlr distance matrix ($dlr.dist),
a data.frame with the dlr distance mirrored ($dlr.matrix),
the list of dlr plots ($dlr.plots)
Thierry Gosselin thierrygosselin@icloud.com
Paetkau D, Slade R, Burden M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65.
Paetkau D, Waits LP, Clarkson PL, Craighead L, Strobeck C (1997) An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics, 147, 1943-1957.
Meirmans PG, Van Tienderen PH (2004) genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes, 4, 792-794.
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