Man pages for thierrygosselin/assigner
Assignment Analysis with RADseq Data

assigner_parallelhack to switch function for parallel computation based on OS
assigner_statsassigner_stats
assignment_adegenetassignment with adegenet
assignment_gsi_simassignment with gsi_sim
assignment_marker_loopassignment_marker_loop
assignment_ngsAssignment analysis tailored for RADseq data
assignment_randomassignment_random
assignment_rankingassignment_ranking
assignment_subsamplesassignment_subsamples
boot_ciboot_ci
boot_ci_neiboot_ci_nei
clean_marker_numberclean_marker_number
compound_assignment_pipe_operatorcompound assignment pipe operator
compute_fstcompute_fst
compute_fst_neicompute_fst_nei
data_assigner_sim_01Simulated dataset to test assigner
data_assigner_sim_02Simulated dataset to test assigner
dlrGenotype likelihood ratio distance (Dlr)
dlr_relativedlr_relative
Exposition_pipe_operatorExposition pipe-operator
fst_NEI87A fast implementation of Nei's 1987 Fst (overall and paiwise...
fst_nei_subsamplefst_nei_subsample
fst_subsamplefst_subsample
fst_WC84A fast implementation of Weir and Cockerham (1984) Fst/Theta...
generate_holdhoutgenerate_holdhout
generate_subsamplesgenerate_subsamples
gsi_sim_binaryfile path to be used in a call to gsi_sim.
gsi_sim_binary_pathreturn the path where gsi_sim should be in the R system paths
gsi_sim_existsreturn TRUE if gsi_sim exists where it should be
gsi_sim_is_executablereturn TRUE if gsi_sim is executable
heatmap_fstheatmap_fst
import_subsamplesImport individual's assignment results of different subsample...
import_subsamples_fstImport the fst ranking from all the subsample runs inside an...
install_gsi_simdownloads gsi_sim that is appropriate for the operating...
marker_selectionmarker_selection
nThe number of observations in the current group.
pairwise_fstpairwise_fst
pairwise_fst_neipairwise_fst_nei
pipeForward-pipe operator
plot_assignmentplot_assignment
plot_dlrAssignment plot of genotype likelihood (Dlr).
subsampling_datasubsampling data
thierrygosselin/assigner documentation built on May 31, 2019, 10:39 a.m.