data_assigner_sim_02: Simulated dataset to test assigner

In thierrygosselin/assigner: Assignment Analysis with RADseq Data

Simulated dataset to test assigner

Description

A dataset of genotypes containing 500 bi-allelic SNPs, simulated for 250 individuals, 5 populations.

Usage

data_assigner_sim_02

Format

A tibble with 125000 rows (genotypes) and 4 variables:

MARKERS

SNPs markers

POP_ID

Populations/strata for the samples

INDIVIDUALS

Samples id

GT

Genotypes coded a la genepop format

Details

Dataset simulation caracteristics:

• num.pops: 5

• num.loci: 1000

• div.time: 25e3

• ne: 200

• nm: 0.5

• theta: 0.2

• mig.type: island

• mut.rate: 2.5e-4

• mig.rate: 0.0025

From this simulated dataset, 500 SNPs and 250 individuals (50 ind/pop) were randomly selected.

Source

The data was simulated with grur https://thierrygosselin.github.io/grur/reference/simulate_rad.html

thierrygosselin/assigner documentation built on Nov. 9, 2024, 3:38 a.m.