plot_dlr: Assignment plot of genotype likelihood (Dlr).

In thierrygosselin/assigner: Assignment Analysis with RADseq Data

Assignment plot of genotype likelihood (Dlr).

Description

The function generate a figure similar to Paetkau's et al. (2004) Fig 6.

Usage

plot_dlr(
  data,
  pop.pairwise,
  dlr = NULL,
  x.dlr = NULL,
  y.dlr = NULL,
  fst = NULL,
  x.fst = NULL,
  y.fst = NULL,
  plot.dlr = TRUE,
  plot.width = NULL,
  plot.height = NULL,
  plot.dpi = NULL
)

Arguments

data	The assigment object from dlr output.
pop.pairwise	List of pairwise populations to generate the Dlr plot.
dlr	(optional) Character string with Dlr value.
x.dlr	(optional) Position to the x-axis of the Dlr value.
y.dlr	(optional) Position to the y-axis of the Dlr value.
fst	(optional) Character string with Fst value.
x.fst	(optional) Position to the x-axis of the Fst value.
y.fst	(optional) Position to the y-axis of the Fst value.
plot.dlr	(optional) By default will write the plot in the working directory.
plot.width	(optional) Width in cm of the figure.
plot.height	(optional) height in cm of the figure.
plot.dpi	(optional) Number of dpi for the figure (e.g 600).

Value

A list with the assignment table and the assignment plot.

Author(s)

Thierry Gosselin [e-mail]

References

Paetkau D, Slade R, Burden M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65.

Meirmans PG, Van Tienderen PH (2004) genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes, 4, 792-794.

thierrygosselin/assigner documentation built on Nov. 9, 2024, 3:38 a.m.