detect_biallelic_markers: Detect biallelic data

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Detect biallelic data

Description

Detect if markers in tidy dataset or radiator gds are biallelic. Used internally in radiator and might be of interest for users.

Usage

detect_biallelic_markers(
  data,
  verbose = FALSE,
  parallel.core = parallel::detectCores() - 1
)

Arguments

data	(4 options) A file or object generated by radiator: tidy data Genomic Data Structure (GDS) How to get GDS and tidy data ? Look into tidy_genomic_data, read_vcf or tidy_vcf.
verbose	(optional, logical) verbose = TRUE to be chatty during execution. Default: verbose = FALSE.
parallel.core	(optional) The number of core used for parallel execution. Default: parallel.core = parallel::detectCores() - 1.

Value

A logical character string (TRUE/FALSE). That answer the question if the data set is biallelic or not.

Author(s)

Thierry Gosselin [e-mail]

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.