diagnostic_maf: MA diagnostic

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

MA diagnostic

Description

Minor Allele diagnostic, help choose a filter threshold.

Usage

diagnostic_ma(data, group.rank, filename = NULL)

Arguments

data	A file in the working directory or object in the global environment in wide or long (tidy) formats. To import, the function uses radiator tidy_wide. See details of this function for more info.
group.rank	(Number) The number of group to class the MAF.
filename	(optional) Name of the file written to the working directory.

Details

Highly recommended to look at the distribution of MAF

See Also

filter_ma

Examples

## Not run: 
problem <- radiator::diagnostic_ma(
data = tidy.salmon.data, group.rank = 10)

## End(Not run)

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.