detect_gt: detect_gt

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

detect_gt

Description

Detect the genotype format used in the data set. Sample one if multiple are present.

Usage

detect_gt(
  x,
  gt.format = c("GT", "GT_BIN", "GT_VCF", "GT_VCF_NUC"),
  keep.one = TRUE,
  favorite = "GT_BIN"
)

Arguments

x	The data
gt.format	(character) Default: gt.format = c("GT", "GT_BIN", "GT_VCF", "GT_VCF_NUC").
keep.one	(logical) Will return only one format if keep.one = TRUE. Default: keep.one = TRUE.
favorite	If more than one format is present and keep.one = TRUE, the favorite will be returned, if present. Sample one if not present. Default: favorite = "GT_BIN".

thierrygosselin/radiator documentation built on April 25, 2024, 3:20 a.m.