estimate_m: heterozygotes miscall rate
In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R
estimate_m R Documentation
heterozygotes miscall rate
Description
estimate the heterozygotes miscall rate from a simple model
Usage
estimate_m(
data,
nreps = 200,
m_init = stats::runif(1),
a0 = 0.5,
a1 = 0.5,
sm = 0.005
)
Arguments
data
A tidy data frame (biallelic only).
nreps
number of MCMC sweeps to do.
Default: nreps = 200.
m_init
initial starting value for m must be between 0 and 1
a0
beta parameter for reference alleles
a1
beta parameter for alternate alleles
sm
standard devation of proposal distribution for m
Author(s)
Eric Anderson eric.anderson@noaa.gov
thierrygosselin/radiator documentation built on April 25, 2024, 3:20 a.m.
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| estimate_m | R Documentation |
heterozygotes miscall rate
Description
estimate the heterozygotes miscall rate from a simple model
Usage
estimate_m(
data,
nreps = 200,
m_init = stats::runif(1),
a0 = 0.5,
a1 = 0.5,
sm = 0.005
)
Arguments
data |
A tidy data frame (biallelic only). |
nreps |
number of MCMC sweeps to do.
Default: |
m_init |
initial starting value for m must be between 0 and 1 |
a0 |
beta parameter for reference alleles |
a1 |
beta parameter for alternate alleles |
sm |
standard devation of proposal distribution for m |
Author(s)
Eric Anderson eric.anderson@noaa.gov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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