API for thierrygosselin/stackr
Run stacks software pipeline for RADseq analysis inside R
| Global functions | |
|---|---|
| %$% | Man page |
| %<>% | Man page |
| %>% | Man page |
| .stackr_parallel | Man page |
| .stackr_parallel_mc | Man page |
| build_stackr_workflow_dir | Man page Source code |
| change_pop_names | Man page |
| check_fq | Man page Source code |
| clean | Source code |
| clean_fq | Man page Source code |
| clean_fq_filename | Man page |
| clean_ind_names | Man page |
| clean_markers_names | Man page |
| clean_pop_names | Man page |
| extract_catalog_sql_ids | Man page Source code |
| fq_file_type | Man page |
| list_sample_file | Man page Source code |
| loc_pop_stats | Man page |
| mclapply_win | Man page Source code |
| merge_bam | Man page Source code |
| merge_fq | Man page |
| merge_parallel | Man page Source code |
| mismatch_dir | Man page Source code |
| mismatch_fig | Man page Source code |
| n | Man page |
| normalize_reads | Man page Source code |
| pi | Man page |
| pi_pop | Man page |
| read_count_one | Man page |
| read_counter | Man page Source code |
| read_depth_plot | Man page Source code |
| read_stacks_ustacks_log | Man page Source code |
| reads_length_distribution | Man page Source code |
| reads_stats | Man page Source code |
| rename_fq | Man page Source code |
| run_cstacks | Man page Source code |
| run_gstacks | Man page Source code |
| run_populations | Man page Source code |
| run_process_radtags | Man page Source code |
| run_radproc | Man page Source code |
| run_split_cstacks | Man page |
| run_sstacks | Man page Source code |
| run_tsv2bam | Man page Source code |
| run_ustacks | Man page Source code |
| run_ustacks_one_sample | Man page |
| separate_haplo | Man page |
| separate_haplo_long | Man page |
| split_bam_list | Man page Source code |
| split_pop_map | Man page Source code |
| split_tibble_rows | Man page Source code |
| split_vec_row | Man page Source code |
| stackr_normalize | Man page Source code |
| stats_stackr | Man page |
| strata_haplo | Man page |
| summary_catalog_log_lik | Man page Source code |
| summary_cstacks | Man page Source code |
| summary_genotypes | Man page Source code |
| summary_haplotypes | Man page Source code |
| summary_pstacks | Man page Source code |
| summary_reads | Man page Source code |
| summary_sstacks | Man page Source code |
| summary_ustacks | Man page Source code |
| write_normalize | Man page Source code |
