run_ustacks_one_sample | R Documentation |
run ustacks for 1 sample
run_ustacks_one_sample(
mismatch.testing = FALSE,
sample.list = NULL,
project.info = NULL,
f = "04_process_radtags",
o = "06_ustacks_2_gstacks",
m = 3,
M = 2,
N = M + 2,
t = "guess",
R = FALSE,
H = TRUE,
parallel.core = parallel::detectCores() - 1,
h = FALSE,
d = TRUE,
keep.high.cov = FALSE,
high.cov.thres = 3,
max.locus.stacks = 3,
k.len = NULL,
max.gaps = 2,
min.aln.len = 0.8,
disable.gapped = FALSE,
model.type = "snp",
alpha = 0.05,
bound.low = 0,
bound.high = 0.2,
bc.err.freq = NULL
)
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