run_split_cstacks: run_split_cstacks
In thierrygosselin/stackr: Run stacks software pipeline for RADseq analysis inside R
Description
The function that runs cstacks
Usage
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run_split_cstacks(
catalog.id = NULL,
o = "06_ustacks_2_gstacks",
M = "02_project_info/population.map.catalog.tsv",
catalog.path = NULL,
P = "06_ustacks_2_gstacks",
n = 1,
parallel.core = parallel::detectCores() - 1,
max.gaps = 2,
min.aln.len = 0.8,
disable.gapped = FALSE,
k.len = NULL,
report.mmatches = FALSE
)
thierrygosselin/stackr documentation built on Nov. 11, 2020, 11 a.m.
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Description
The function that runs cstacks
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | run_split_cstacks(
catalog.id = NULL,
o = "06_ustacks_2_gstacks",
M = "02_project_info/population.map.catalog.tsv",
catalog.path = NULL,
P = "06_ustacks_2_gstacks",
n = 1,
parallel.core = parallel::detectCores() - 1,
max.gaps = 2,
min.aln.len = 0.8,
disable.gapped = FALSE,
k.len = NULL,
report.mmatches = FALSE
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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