stackr_parallel: hack to switch function for parallel computation based on OS

In thierrygosselin/stackr: Run stacks pipeline for RADseq analysis inside R

hack to switch function for parallel computation based on OS

Description

parallel::mclapply doesn't work on Windows, because forking is not supported. This function defines a socket version of mclapply for windows computer An implementation that switch automatically the parallel process when detecting the os. The code below was inspired from parallel mclapply, Nathan VanHoudnos, Kevin Kuang, Peter Solymos and Eric Archer.

Usage

mclapply_win(
  X,
  FUN,
  ...,
  mc.preschedule = TRUE,
  mc.set.seed = TRUE,
  mc.silent = FALSE,
  mc.cores = NULL,
  mc.cleanup = TRUE,
  mc.allow.recursive = TRUE
)

.stackr_parallel_mc(
  X,
  FUN,
  ...,
  mc.preschedule = TRUE,
  mc.set.seed = TRUE,
  mc.silent = FALSE,
  mc.cores = getOption("mc.cores", 2L),
  mc.cleanup = TRUE,
  mc.allow.recursive = TRUE,
  affinity.list = NULL
)

.stackr_parallel(
  X,
  FUN,
  ...,
  mc.style = "ETA",
  mc.substyle = NA,
  mc.cores = getOption("mc.cores", 2L),
  ignore.interactive = getOption("ignore.interactive", F),
  mc.preschedule = TRUE,
  mc.set.seed = TRUE,
  mc.cleanup = TRUE,
  mc.allow.recursive = TRUE
)

Arguments

X	see parallel mclapply
FUN	see parallel mclapply
...	see parallel mclapply
mc.preschedule	see parallel mclapply
mc.set.seed	see parallel mclapply
mc.silent	see parallel mclapply
mc.cores	see parallel mclapply
mc.cleanup	see parallel mclapply
mc.allow.recursive	see parallel mclapply

Value

For mclapply, a list of the same length as X and named by X.

For mclapply, a list of the same length as X and named by X.

thierrygosselin/stackr documentation built on April 13, 2025, 10:28 a.m.