Files in thijsjanzen/junctions
The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
.RData
.Rbuildignore
.Rhistory
.appveyor.yml
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/cpp_lint.yml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/calc_K.R
R/calculate_MAT.R
R/calculate_error.R
R/estimate_time.R
R/estimate_time_diploid.R
R/estimate_time_haploid.R
R/estimate_time_one_chrom.R
R/log_likelihood_diploid.R
R/log_likelihood_haploid.R
R/number_of_junctions.R
R/number_of_junctions_backcross.R
R/number_of_junctions_di.R
R/number_of_junctions_markers.R
R/sim_backcrossing.R
R/sim_fin_chrom.R
R/sim_inf_chrom.R
R/sim_phased_unphased.R
R/util.R
README.md
inst/CITATION
junctions.Rproj
man/calc_k.Rd
man/calculate_MAT.Rd
man/estimate_time.Rd
man/estimate_time_diploid.Rd
man/estimate_time_haploid.Rd
man/estimate_time_one_chrom.Rd
man/junctions-package.Rd
man/log_likelihood_diploid.Rd
man/log_likelihood_haploid.Rd
man/number_of_junctions.Rd
man/number_of_junctions_backcross.Rd
man/number_of_junctions_di.Rd
man/number_of_junctions_markers.Rd
man/sim_backcrossing.Rd
man/sim_fin_chrom.Rd
man/sim_inf_chrom.Rd
man/sim_phased_unphased.Rd
man/time_error.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/TravisCI.png
pics/junctions_sticker3.png
src/Fish.cpp
src/Fish.h
src/Makevars
src/Makevars.win
src/Output.cpp
src/Output.h
src/RcppExports.cpp
src/backcrossing.cpp
src/estimate_time_unphased.cpp
src/estimate_time_unphased.h
src/main_functions.cpp
src/random_functions.h
src/unphased.cpp
src/util.h
tests/testthat.R
tests/testthat/test-backcrossing.R
tests/testthat/test-equations.R
tests/testthat/test-estim_time_haploid.R
tests/testthat/test-marker_dist.R
tests/testthat/test-one-chrom.R
tests/testthat/test-phased-error.R
tests/testthat/test-phased.R
tests/testthat/test-sims.R
tests/testthat/test-unphased.R
vignettes/Overview_of_the_junctions_package.Rmd
vignettes/junctions_vignette.Rmd
vignettes/phased_and_unphased_data.Rmd
