time_error: Estimate the error in the time estimate
In thijsjanzen/junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
View source: R/calculate_error.R
time_error R Documentation
Estimate the error in the time estimate
Description
Calculate the error in the estimate of the onset of
hybridization, following Equations 3 & 4 in the Supplementary information of
Janzen et al. 2018.
Usage
time_error(t = NA, N = Inf, R = Inf, H_0 = 0.5, C = 1, relative = TRUE)
Arguments
t
Inferred time
N
Population Size
R
Number of genetic markers
H_0
Frequency of heterozygosity at t = 0
C
Mean number of crossovers per meiosis (e.g. size in Morgan of
the chromosome)
relative
Boolean flag, if TRUE: return the relative error, if FALSE:
return error in generations
Value
Expected error in the time estimate
thijsjanzen/junctions documentation built on June 11, 2025, 11:36 p.m.
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View source: R/calculate_error.R
| time_error | R Documentation |
Estimate the error in the time estimate
Description
Calculate the error in the estimate of the onset of hybridization, following Equations 3 & 4 in the Supplementary information of Janzen et al. 2018.
Usage
time_error(t = NA, N = Inf, R = Inf, H_0 = 0.5, C = 1, relative = TRUE)
Arguments
t |
Inferred time |
N |
Population Size |
R |
Number of genetic markers |
H_0 |
Frequency of heterozygosity at t = 0 |
C |
Mean number of crossovers per meiosis (e.g. size in Morgan of the chromosome) |
relative |
Boolean flag, if TRUE: return the relative error, if FALSE: return error in generations |
Value
Expected error in the time estimate
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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