number_of_junctions_di: Calculate the expected number of junctions between two...

In thijsjanzen/junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Calculate the expected number of junctions between two markers separated by a given amount of recombination

Description

Calculate the expected number of junctions after t generations, provided information on the initial heterozygosity, population size, the number of generations since the onset of admixture and the distance between two markers.

Usage

number_of_junctions_di(N = Inf, H_0 = 0.5, t = 100, di = 1e-06)

Arguments

N	Population Size
H_0	Frequency of heterozygosity at t = 0
t	Time since admixture
di	Distance between two markers in Morgan

Value

Estimated number of junctions at time t

Examples

number_of_junctions_di(N = 100, H_0 = 0.5, t = 1000, di = 0.01)

thijsjanzen/junctions documentation built on June 11, 2025, 11:36 p.m.