The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

calc_k | Calculate the limit of the number of junctions |

calculate_MAT | Function to calculate the maximum accurate time |

estimate_time | Estimate the time since the onset of hybridization, using the... |

estimate_time_markers | Estimate the time since the onset of hybridization, using the... |

estimate_time_phased | estimates the time since admixture, given unphased ancestry... |

estimate_time_unphased | estimates the time since admixture, given unphased ancestry... |

junctions-package | Extending The Theory of Junctions |

number_of_junctions | Calculate the average number of junctions |

number_of_junctions_backcross | Calculate the average number of junctions during backcrossing |

number_of_junctions_di | Calculate the expected number of junctions between two... |

number_of_junctions_markers | Calculate the expected total number of junctions in a... |

optim_limits | Optimizes the lower and upper limit for estimation of time |

phased_log_likelihood | calculate the log likelihood of observing the data |

sim_backcrossing | Function to simulate data using a back crossing scheme |

sim_fin_chrom | Individual Based Simulation of the accumulation of junctions |

sim_inf_chrom | Individual Based Simulation of the accumulation of junctions |

sim_phased_unphased | Individual Based Simulation of the accumulation of junctions |

time_error | Estimate the error in the time estimate |

unphased_log_likelihood | calculate the log likelihood of observing the data |

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