Man pages for thijsjanzen/junctions
The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

calc_kCalculate the limit of the number of junctions
calculate_MATFunction to calculate the maximum accurate time
estimate_timeEstimate the time since the onset of hybridization, using the...
estimate_time_markersEstimate the time since the onset of hybridization, using the...
estimate_time_phasedestimates the time since admixture, given unphased ancestry...
estimate_time_unphasedestimates the time since admixture, given unphased ancestry...
junctions-packageExtending The Theory of Junctions
number_of_junctionsCalculate the average number of junctions
number_of_junctions_backcrossCalculate the average number of junctions during backcrossing
number_of_junctions_diCalculate the expected number of junctions between two...
number_of_junctions_markersCalculate the expected total number of junctions in a...
optim_limitsOptimizes the lower and upper limit for estimation of time
phased_log_likelihoodcalculate the log likelihood of observing the data
sim_backcrossingFunction to simulate data using a back crossing scheme
sim_fin_chromIndividual Based Simulation of the accumulation of junctions
sim_inf_chromIndividual Based Simulation of the accumulation of junctions
sim_phased_unphasedIndividual Based Simulation of the accumulation of junctions
time_errorEstimate the error in the time estimate
unphased_log_likelihoodcalculate the log likelihood of observing the data
thijsjanzen/junctions documentation built on June 14, 2019, 3:12 a.m.