Description Usage Arguments Value
Calculate infection rates for each colony.
Calculate recovery rates for each colony.
1 2 3  | infectionR(pop, t)
recoveryR(pop, t)
 | 
pop | 
 A population object  | 
t | 
 Time step. Note the population should be AT time t, going to t+1.  | 
nColonies * nPathogens vector Grouped by pathogen
nColonies * nPathogens vector Grouped by pathogen
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