plotColonyNet: Plot the population network in space

In timcdlucas/MetapopEpi: Functions to run multipathogen, metapopulation epidemiological simulations

Description

Plot showing the colonies, and the edges between them, with line thickness indicating weight.

Plot showing the weight of edges by colouring the adjacency matrix.

Usage

plotColonyNet(pop, lwd = 1.2, axes = FALSE, col = 1, area = NULL,
  alpha = 0.1, lowgrey = 0, highgrey = 0.4, ...)

colonyHeat(weightMatrix)

Arguments

pop	A metapopulation object as created by makePop().
lwd	Relative line width. This value is scaled to a reasonable value.
axes	If set to FALSE, don't plot any axes
col	Point colours. Either value 1 or 2 for presets or a length two vector giving the line and fill colours.
area	The length of the sides of the plotting area. Either a length 2 numeric giving the x and y lengths, or a length one numeric giving the length of both.
alpha	Transparency level in range (0, 1).
lowgrey	Lower limit for grey colours used in lines (between 0 and 1).
highgrey	Upper limit for grey colours used in lines (between 0 and 1 and greater than lowgrey).
...	Further arguments to par.
weightMatrix	A matrix

timcdlucas/MetapopEpi documentation built on May 31, 2019, 1:47 p.m.