weightMatrix: Draw weighted adjacency matrix between colonies

In timcdlucas/MetapopEpi: Functions to run multipathogen, metapopulation epidemiological simulations

Description

For weighted networks, draw an adjacency matrix showing which colonies are connected and how strongly connected they are depending on a kernel that defines how connection strength decreases with distance.

Many kernels have a maximum threshold above which colonies aren't connected. This simplified things as otherwise all colonies would be connected to some extent. This threshold is defined with the argument maxDistance.

Usage

weightMatrix(locations, maxDistance, kern)

Arguments

locations	x, y numeric locations of each colony.
maxDistance	For kernels with an upper threshold
kern	Character, giving the name of the distance kernel to be used.

timcdlucas/MetapopEpi documentation built on May 31, 2019, 1:47 p.m.