inst/helpfiles/tabPanel_boxplot.md

In tnaake/MatrixQCvis: Shiny-based interactive data-quality exploration for omics data

Boxplot or violin plots of assay values among the samples

This tab shows the assay values for

• raw (raw),
• normalized (normalized),
• normalized+batch corrected (batch corrected),
• normalized+batch corrected+transformed (transformed),
• normalized+batch corrected+transformed+imputed (imputed)

assay values. The imputed values are only displayed if there are missing values (NAs) in the raw data set. The different methods for normalization, transformation, batch correction and imputation are specified in the side panel.

For visualization purposes only, the assay values for the raw and normalized data sets can be log transformed (Display log values? (only for 'raw' and 'normalized')).

The type of visualization (boplot or violin plot) can be specified by selecting boxplot or violin in the radio button panel.

tnaake/MatrixQCvis documentation built on June 20, 2024, 7:22 a.m.