inst/helpfiles/tabPanel_boxplot_missingValue_TRUE.md

In tnaake/MatrixQCvis: Shiny-based interactive data-quality exploration for omics data

Boxplot or violin plots of assay values among the samples

This tab shows the assay values for raw (raw), normalized (normalized), normalized+transformed (transformed), normalized+transformed+batch corrected (batch corrected) and normalized+transformed+batch corrected+imputed (imputed) assay values (imputation of missing values). The different methods for normalization, transformation, batch correction and imputation are specified in the side panel.

For visualization purposes only, the assay values for the raw and normalized data sets can be log2 transformed (Display log2 values? (only for 'raw' and 'normalized')).

The type of visualization (boplot or violin plot) can be specified by selecting boxplot or violin in the radio button panel.

tnaake/MatrixQCvis documentation built on June 20, 2024, 7:22 a.m.