inst/helpfiles/tabPanel_ecdf.md

In tnaake/MatrixQCvis: Shiny-based interactive data-quality exploration for omics data

Empirical distribution function

The plot shows the empirical distribution function (ECDF) of the values of the sample $i$ and the feature-wise mean values of a group $j$ of samples specified by the drop-down menu Group. The sample for calculating $I_i$ is excluded from the group $j$. The group can be set to "all" (i.e. all samples except sample $i$ are used to calculate $I_j$) or any other column in colData(se). For any group except "all" the group is taken to which the sample $i$ belongs to and the sample $i$ is excluded from the feature-wise calculation.

The underlying data set can be selected by the drop-down menu Data set for the MA plot. The sample $i$ can be selected by the drop-down menu Sample. The group can be selected by the drop-down menu Group.

tnaake/MatrixQCvis documentation built on June 20, 2024, 7:22 a.m.