inst/helpfiles/tabPanel_meanSd_missingValue_TRUE.md

In tnaake/MatrixQCvis: Shiny-based interactive data-quality exploration for omics data

Mean-sd plots

The panel shows the three mean-sd (standard deviation) plots for normalized+transformed (transformed), normalized+transformed+batch corrected (batch corrected), and normalized+transformed+batch corrected+imputed (imputed) assay values. The sd and mean are calculated feature-wise from the values of the respective data set. The plot allows to visualize if there is a dependence of the sd on the mean. The red line depicts the running median estimator (window-width 10%). In case of sd-mean independence, the running median should be approximately horizontal.

tnaake/MatrixQCvis documentation built on June 20, 2024, 7:22 a.m.