byStrand: simple helper function to split a *RangesList by the strand...
In trichelab/MTseeker: Bioconductor Tools for Human Mitochondrial Variant Analysis
Description
Usage
Arguments
Value
Examples
Description
If presented with a GAlignments/MAlignments, this method will split the
element by strand, i.e. + alignments and - alignments. Otherwise the method
retrieves ranges/variant calls that overlap genic elements on the heavy and
light strands of the mitochondrial genome.
Usage
1
byStrand(x, anno)
Arguments
x
a *RangesList or *AlignmentsList
anno
Annotation information for the reference genome
Value
1
Examples
1
2
3
data(mtAnno.rCRS)
data(RONKSvariants, package="MTseekerData")
byStrand(RONKSvariants, mtAnno)
trichelab/MTseeker documentation built on March 8, 2021, 6:20 p.m.
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Description Usage Arguments Value Examples
Description
If presented with a GAlignments/MAlignments, this method will split the element by strand, i.e. + alignments and - alignments. Otherwise the method retrieves ranges/variant calls that overlap genic elements on the heavy and light strands of the mitochondrial genome.
Usage
1 | byStrand(x, anno)
|
Arguments
x |
a *RangesList or *AlignmentsList |
anno |
Annotation information for the reference genome |
Value
1 |
Examples
1 2 3 | data(mtAnno.rCRS)
data(RONKSvariants, package="MTseekerData")
byStrand(RONKSvariants, mtAnno)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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