exportFilteredAsVcf: convenience wrapper for dumping filtered variants directly to...
In trichelab/MTseeker: Bioconductor Tools for Human Mitochondrial Variant Analysis
Description
Usage
Arguments
Value
Examples
View source: R/exportFilteredAsVcf.R
Description
convenience wrapper for dumping filtered variants directly to an indexed VCF
Usage
1
exportFilteredAsVcf(vars, file = NULL, ...)
Arguments
vars
an MVRanges or MVRangesList to filter, HGVS-annotate, and dump
file
the name of the resulting VCF file to produce (default is NULL)
...
other arguments, passed to filterMTvars()
Value
the filtered set of variants (as an MVRanges) that was exported
Examples
1
2
3
library(MTseekerData)
filterMTvars(RONKSvariants$RO_1)
exportFilteredAsVcf(RONKSvariants$RO_1, file=NULL) # not written to a file
trichelab/MTseeker documentation built on March 8, 2021, 6:20 p.m.
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Description Usage Arguments Value Examples
View source: R/exportFilteredAsVcf.R
Description
convenience wrapper for dumping filtered variants directly to an indexed VCF
Usage
1 | exportFilteredAsVcf(vars, file = NULL, ...)
|
Arguments
vars |
an MVRanges or MVRangesList to filter, HGVS-annotate, and dump |
file |
the name of the resulting VCF file to produce (default is NULL) |
... |
other arguments, passed to filterMTvars() |
Value
the filtered set of variants (as an MVRanges) that was exported
Examples
1 2 3 | library(MTseekerData)
filterMTvars(RONKSvariants$RO_1)
exportFilteredAsVcf(RONKSvariants$RO_1, file=NULL) # not written to a file
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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