rawMTreads: Raw reads shown as GAlignmentsList
In trichelab/MTseeker: Bioconductor Tools for Human Mitochondrial Variant Analysis
Description
Usage
Arguments
Value
Examples
Description
Raw reads shown as GAlignmentsList
Usage
1
rawMTreads(bams)
Arguments
bams
List of files
Value
1
GAlignments or GAlignmentsList of raw reads
Examples
1
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5
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7
library(MTseekerData)
BAMdir <- system.file("extdata", "BAMs", package="MTseekerData")
BAMs <- list.files(BAMdir, pattern="bam$")
BAMs <- paste0(BAMdir, "/", BAMs)
rawReads <- rawMTreads(BAMs)
rawReads_1 <- MAlignments(rawReads[[1]], BAMs[1])
plotMTCoverage(rawReads_1)
trichelab/MTseeker documentation built on March 8, 2021, 6:20 p.m.
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Description Usage Arguments Value Examples
Description
Raw reads shown as GAlignmentsList
Usage
1 | rawMTreads(bams)
|
Arguments
bams |
List of files |
Value
1 | GAlignments or GAlignmentsList of raw reads
|
Examples
1 2 3 4 5 6 7 | library(MTseekerData)
BAMdir <- system.file("extdata", "BAMs", package="MTseekerData")
BAMs <- list.files(BAMdir, pattern="bam$")
BAMs <- paste0(BAMdir, "/", BAMs)
rawReads <- rawMTreads(BAMs)
rawReads_1 <- MAlignments(rawReads[[1]], BAMs[1])
plotMTCoverage(rawReads_1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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