saveData: saveData

In uebvhir/BasicP4microArrays: Functions to create and run simple-to-complex microarray analysis pipeline

Description

Function that saves a R object in files.

Usage

saveData(expres, expresNames = colnames(expres), expres.csv.FileName,
  csvType, description = "Normalized Values", anotPackage,
  SYMBOL = "SYMBOL", symbolsVector = NULL, expres.bin.FileName,
  linksFile, outputDir)

Arguments

expres	Object to be saved.
expresNames	Names of the samples of expression.
expres.csv.FileName	Name of the csv file.
csvType	Csv type.
description	Description of the file for Linksfile.
anotPackage	Package of annotations.
SYMBOL	????????
symbolsVector	Name of the symbols table.
expres.bin.FileName	File name of the filtered data.
linksFile	Character string that indicates the path to the txt file.
outputDir	Path of the file created.

Examples

## Not run: 
load("./ResultsDir/normalizedData.Rda")
repes <- duplicated(exprs(my.norm), MARGIN=1)
exprs(my.norm) <- exprs(my.norm)[!repes,]
eset_norm <- my.norm
normalized.all.FileName <- "normalized.all"
fileType <-"csv2"
symbolsTable <- load("./ResultsDir/Symbols.Rda")
expres.all.FileName <- "expres.Rda"
linksFileName <- "Links.txt"
outputDir <- "./ResultsDir"
saveData(expres = exprs(eset_norm), expres.csv.FileName = normalized.all.FileName,
csvType=fileType, description = "Normalized values for all genes", anotPackage = NULL,
symbolsVector = symbolsTable, SYMBOL = "SYMBOL", expres.bin.FileName = expres.all.FileName,
linksFile = linksFileName, outputDir = outputDir)
## End(Not run)

uebvhir/BasicP4microArrays documentation built on Nov. 5, 2019, 11:03 a.m.