GeneAnnotation.: Function to create a table with annotations to provide...

In uebvhir/BasicP4microArrays: Functions to create and run simple-to-complex microarray analysis pipeline

Description

Function to create a table with annotations to provide information about elected genes.

Usage

GeneAnnotation(egIDs, anotPackage, toHTML = TRUE, outputDir,
  filename = "annotations",
  myTitle = "Annotations for all genes analyzed",
  specie = "Homo_sapiens", info2show = c("Affymetrix", "EntrezGene"),
  linksFile, maxGenes = NULL)

Arguments

egIDs	Entrez gene identifiers.
anotPackage	Annotation package.
toHTML	If TRUE a html file will be created.
outputDir	Path of the file created.
filename	Name of the file.
myTitle	Title of ???
specie	Specie
info2show	Information that has to be shown
linksFile	Name of the LinksFile.
maxGenes	Maximum number of

Value

It returns the time that the process least.

Examples

## Not run: 
genes2annotate <- entrezs[unique(rownames(fitMain$p.value))]
genesAnnotated <-BasicP::GeneAnnotation(egIDs = genes2annotate, anotPackage = "org.Hs.eg",
                                        toHTML = TRUE, outputDir = outputDir,
                                        filename = "Annotations",
                                        myTitle = "Annotations for all genes analyzed",
                                        specie = "homo sapiens",
                                        info2show = c("Affymetrix", "EntrezGene", "GeneSymbol",
                                        "GeneName", "KEGG", "GO"),
                                        linksFile = linksFile, maxGenes = NULL)

## End(Not run)

uebvhir/BasicP4microArrays documentation built on Nov. 5, 2019, 11:03 a.m.