doGOAnalysis: doGOAnalysis

In uebvhir/BasicP4microArrays: Functions to create and run simple-to-complex microarray analysis pipeline

Description

Function to interate with GOAnalysis

Usage

doGOAnalysis(GOPar)

Arguments

GOPar

List object that contains the parameters needed to carry out the analysis.

Value

GOResult

Examples

## Not run: 
GOResult<-BasicP::GOAnalysis(fitMain = fitMain, whichContrasts = wCont,
                             comparison.Name = "Estudi", outputDir = outputDir,
                             anotPackage = "org.Hs.eg", my.IDs = entrezTable,
                             addGeneNames = TRUE, fileOfLinks = linksFile, thrLogFC = 1,
                             cutoffMethod = "adjusted",
                             P.Value.cutoff = rep(0.05, length(wCont)), pval = 0.01,
                             min.count = 3, ontologias = c("MF", "BP", "CC"),
                             testDirections = c("over", "under"), minNumGens = 0)

## End(Not run)

uebvhir/BasicP4microArrays documentation built on Nov. 5, 2019, 11:03 a.m.