doLmAnalysis: doLmAnalysis Function to make the Linear model analysis. The...

In uebvhir/BasicP4microArrays: Functions to create and run simple-to-complex microarray analysis pipeline

Description

doLmAnalysis Function to make the Linear model analysis. The unique parameter is lmPar list.

Usage

doLmAnalysis(lmPar)

Arguments

lmPar

list object that contains the parameters needed to carry out the analysis.

Examples

## Not run: 
lmParsList <- list()
Estudi <- list(dades = NULL,
               expresFileName = "exprs.filtered.Rda",
               targets = targets,
               designMat = design,
               contMat = cont.matrix,
               whichContrasts = 1:ncol(cont.matrix),
               anotPack = NULL,
               outputDir = outputDir,
               ExpressionsAndTop = TRUE,
               showLmParams = FALSE,
               use.dupCorr = FALSE,
               block = NULL,
               nDups = 1,
               comparisonName = comparison,
               ENTREZIDs = "entrezTable",
               SYMBOLIDs = "symbolsTable",
               fileOfLinks = linksFile,
               fitFileName = fitFileName,
               csvType=csvType,
               rows2HTML = NULL,
               anotFilename = anotFileName
)

lmParsList <- add2parsList(lmParsList, Estudi)

for(ix in 1:length(lmParsList))
{
  fit.Main   <- BasicP::doLmAnalysis(lmParsList[ix])
}

## End(Not run)

uebvhir/BasicP4microArrays documentation built on Nov. 5, 2019, 11:03 a.m.