doGeneAnnotation: doGeneAnnotation

In uebvhir/BasicP4microArrays: Functions to create and run simple-to-complex microarray analysis pipeline

Description

Function that annotates a data set.

Usage

doGeneAnnotation(AnotList)

Arguments

AnotList

List object that contains the parameters needed to carry out the analysis.

Examples

## Not run: 
organisme <- "hsa"
AnotList <- list(fitMain = NULL, fitFileName = fitFileName, my.IDs = "entrezTable",
                 anotPackage = "org.Hs.eg", toHTML = TRUE, outputDir = outputDir,
                 anotFilename = "Annotations",
                 titleAnotations = "Annotations for all genes analyzed", specie = "homo sapiens",
                 info2show = c("Affymetrix", "EntrezGene", "GeneSymbol",
                               "GeneName", "KEGG", "GO"),
                 linksFile = linksFile, numGenesPerPage = NULL)

BasicP::doGeneAnnotation(AnotList)
## End(Not run)

uebvhir/BasicP4microArrays documentation built on Nov. 5, 2019, 11:03 a.m.