DuplicationMetrics: DuplicationMetrics

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

DuplicationMetrics

Description

Collection DuplicationMetrics with picard.

Usage

  DuplicationMetrics(inBams, mc.cores = ezThreads())

Arguments

inBams	character(n): the filepaths of input bam files.
mc.cores	integer(1): the threads to use.

Value

A data.frame of metrics.

Author(s)

Ge Tan

References

http://broadinstitute.github.io/picard/picard-metric-definitions.html#DuplicationMetrics

See Also

CollectRnaSeqMetrics

Examples

  ## Not run: 
    inBam <- "/srv/gstore/projects/p2497/SCCountsApp_24762_2018-02-20--21-32-42/20171222.A-SiCSeq_SCs_P5.bam"
    DuplicationMetrics(inBam)
  
## End(Not run)

uzh/ezRun documentation built on April 14, 2024, 5:09 a.m.