cleanGenomeFiles: Cleans genome files
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
View source: R/ngsReferenceFiles.R
cleanGenomeFiles R Documentation
Cleans genome files
Description
Removes from the seqence files all descriptions in the header line.
Usage
cleanGenomeFiles(genomeFile, genesFile)
Arguments
genomeFile
a character specifying the path to a fasta file.
genesFile
a character specifying the path to a gtf file.
Value
Returns a list containing a fasta and a gtf object.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
gtf = system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE)
fasta = system.file("extdata/genome.fa", package="ezRun", mustWork=TRUE)
cg = cleanGenomeFiles(fasta, gtf)
uzh/ezRun documentation built on April 14, 2024, 5:09 a.m.
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View source: R/ngsReferenceFiles.R
| cleanGenomeFiles | R Documentation |
Cleans genome files
Description
Removes from the seqence files all descriptions in the header line.
Usage
cleanGenomeFiles(genomeFile, genesFile)
Arguments
genomeFile |
a character specifying the path to a fasta file. |
genesFile |
a character specifying the path to a gtf file. |
Value
Returns a list containing a fasta and a gtf object.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
gtf = system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE)
fasta = system.file("extdata/genome.fa", package="ezRun", mustWork=TRUE)
cg = cleanGenomeFiles(fasta, gtf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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