enrichrEnrich: Enrichment analysis

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Enrichment analysis

Description

Runs enrichment analysis against the specified databases. By default, the function will use the internal list (getEnrichrLibNames) of the library names.

Usage

enrichrEnrich(
  userListId,
  libNames = getEnrichrLibNames(),
  connectionN = 10,
  retryN = 3
)

Arguments

userListId	userListId returned by the Enrichr server via enrichrAddList
libNames	vector of library names that should be a subset of those specified at the Enrichr website. This function does not validate the list. If the value is NULL, the function will use the internal list.
connectionN	maximum number of concurrent connections to make
retryN	total number of times to retry a query if it fails

Value

list with two elements: success and failure. The first element is a list of data.frame objects that contain enrichment results per library. The names of the success list match the library names. The failure list contains error messages for the libraries that failed enrichment tests. The name of this list may not match the library names. You can determine which libraries failed by comparing the success list with the supplied library names.

Author(s)

Rehrauer, Hubert

Schmid, Peter

Roman Briskine

See Also

runEnrichr, enrichrAddList, getEnrichrLibNames

uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.