alphabetQuality: This filters out sequences which have nonstandard...
In valenlab/amplican: Automated analysis of CRISPR experiments
View source: R/helpers_filters.R
alphabetQuality R Documentation
This filters out sequences which have nonstandard nucleotides.
Description
This filters out sequences which have nonstandard nucleotides.
Usage
alphabetQuality(reads, batch_size = 1e+07)
Arguments
reads
(ShortRead object) Loaded reads from fastq.
batch_size
(numeric) How many reads to process at a time.
Value
(boolean) Logical vector with the valid rows as TRUE.
valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/helpers_filters.R
| alphabetQuality | R Documentation |
This filters out sequences which have nonstandard nucleotides.
Description
This filters out sequences which have nonstandard nucleotides.
Usage
alphabetQuality(reads, batch_size = 1e+07)
Arguments
reads |
(ShortRead object) Loaded reads from fastq. |
batch_size |
(numeric) How many reads to process at a time. |
Value
(boolean) Logical vector with the valid rows as TRUE.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.