getEventInfo: This function takes alignments and gives back the events...

In valenlab/amplican: Automated analysis of CRISPR experiments

This function takes alignments and gives back the events coordinates.

Description

This function takes alignments and gives back the events coordinates.

Usage

getEventInfo(align, ID, ampl_shift, strand_info = "+")

Arguments

align	(PairwiseAlignmentsSingleSubject)
ID	(string)
ampl_shift	(numeric vector) Shift events additionally by this value. PairwiseAlignmentsSingleSubject returns truncated alignments.
strand_info	(string) Either '+', '-' or default '*'
ampl_len	(numeric) Length of the amplicon (subject)

Value

(GRanges) Object with meta-data for insertion, deletion, mismatch

valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.