amplican: Automated analysis of CRISPR experiments.

In valenlab/amplican: Automated analysis of CRISPR experiments

Automated analysis of CRISPR experiments.

Description

Main goals:

1. Flexible pipeline for analysis of the CRISPR Mi-Seq or Hi-Seq data.

2. Compatible with GRanges and data.table style.

3. Precise quantification of mutation rates.

4. Prepare automatic reports as .Rmd files that are flexible and open for manipulation.

5. Provide specialized plots for deletions, insertions, mismatches, variants, heterogeneity of the reads.

Details

To learn more about amplican, start with the vignettes: browseVignettes(package = "amplican")

Author(s)

Maintainer: Eivind Valen [e-mail] [copyright holder]

Authors:

• Kornel Labun [e-mail]

See Also

Useful links:

• https://github.com/valenlab/amplican

• Report bugs at https://github.com/valenlab/amplican/issues

valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.