checkConfigFile: Pre-process a config file and checks that everything is in...
In valenlab/amplican: Automated analysis of CRISPR experiments
View source: R/helpers_warnings.R
checkConfigFile R Documentation
Pre-process a config file and checks that everything is in
order.
Description
Its takes care of the following:
No IDs are duplicated.
Every combination of barcode, forward primer and reverse primer is unique.
Each barcode has unique forward reads file and reverse read files.
Checks that the read files exist with read access.
Usage
checkConfigFile(configTable, fastq_folder)
Arguments
configTable
(data.frame) Config file.
fastq_folder
(string) Path to fastq folder.
Value
(boolean) TRUE, If anything goes wrong stops and prints error.
valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.
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View source: R/helpers_warnings.R
| checkConfigFile | R Documentation |
Pre-process a config file and checks that everything is in order.
Description
Its takes care of the following: No IDs are duplicated. Every combination of barcode, forward primer and reverse primer is unique. Each barcode has unique forward reads file and reverse read files. Checks that the read files exist with read access.
Usage
checkConfigFile(configTable, fastq_folder)
Arguments
configTable |
(data.frame) Config file. |
fastq_folder |
(string) Path to fastq folder. |
Value
(boolean) TRUE, If anything goes wrong stops and prints error.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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