defGR: Helper to construct GRanges with additional metadata columns.

In valenlab/amplican: Automated analysis of CRISPR experiments

Helper to construct GRanges with additional metadata columns.

Description

Helper to construct GRanges with additional metadata columns.

Usage

defGR(
  x,
  ID,
  score,
  strand_info = "+",
  type = "deletion",
  originally = "",
  replacement = ""
)

Arguments

x	(IRanges) names(x) indicating read_id
ID	(string)
score	(numeric) scores from the alignments
strand_info	(string) Either '+', '-'
type	(string)
originally	(string) Base pairs on the amplicon.
replacement	(string) Base pairs on the read.

Value

(GRanges) Object with meta-data

valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.