API for veltenlab/mitoClone
Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations
| Global functions | |
|---|---|
| M_P1 | Man page |
| M_P2 | Man page |
| N_P1 | Man page |
| N_P2 | Man page |
| attach2tree | Source code |
| attachTreeAt | Source code |
| baseCountsFromBamList | Man page Source code |
| blacklists | Man page |
| clones2tree | Source code |
| clusterMetaclones | Man page Source code |
| cutTreeAt | Source code |
| data | Man page |
| getBranches | Source code |
| getCloneLikelihood | Man page Source code |
| getConfidence | Man page Source code |
| getMainClone | Source code |
| getMut2Clone | Man page Source code |
| getNodes | Source code |
| mut2gr | Source code |
| muta_cluster | Man page Source code |
| mutationCalls | Man page |
| mutationCalls-class | Man page |
| mutationCallsFromBlacklist | Man page Source code |
| mutationCallsFromCohort | Man page Source code |
| mutationCallsFromMatrix | Man page Source code |
| overwriteMetaclones | Man page Source code |
| permutate | Source code |
| plotClones | Man page Source code |
| plotTree | Man page Source code |
| pullcounts.vars | Man page Source code |
| quick_cluster | Man page Source code |
| removeDepth | Source code |
| toGraphviz | Source code |
| topy | Source code |
| tree2clones | Source code |
