blacklists: Mitochondrial blacklist
In veltenlab/mitoClone: Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations
Description
Blacklist of variants that are likely not true somatic mutations
Usage
1
Format
A list with three entries:
#'
-
three: Regions of the mitochondrial genome that are within 1 nt of a 3-mer homopolymer (e.g. AAA)
-
mutaseq: Mutations in the mitochondrial genome that were reoccuring across patients (present in more than one individual in the MutaSeq dataset)
-
masked: Regions of the mitochondrial genome that are soft-masked in the UCSC or Ensembl annotations
veltenlab/mitoClone documentation built on April 18, 2021, 5:19 a.m.
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Description
Blacklist of variants that are likely not true somatic mutations
Usage
1 |
Format
A list with three entries: #'
-
three: Regions of the mitochondrial genome that are within 1 nt of a 3-mer homopolymer (e.g. AAA)
-
mutaseq: Mutations in the mitochondrial genome that were reoccuring across patients (present in more than one individual in the MutaSeq dataset)
-
masked: Regions of the mitochondrial genome that are soft-masked in the UCSC or Ensembl annotations
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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